Jupyter Notebook Tutorial Gallery¶

Getting Started¶

Charged Species Example: Nitrous Ion

Placing Ions in RNA¶

Placing Magnesium in Highly Correlated Regions of RNA kink-Turn

Placing Water Molecules¶

Placing Waters in Proteins

High Throughput Small-Molecule Solvation Free Energy¶

Solvation Free Energy: From SMILES strings to FEP-levels of Accuracy in Minutes

Using Oragnic Solvents¶

Getting Started

Organic Solvents as a mixture: Cyanide and Water¶